PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YB
Protein Properties Length: 175aa    MW: 18687.8 Da    PI: 6.788
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041880.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.85.1e-5629123195
                 NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                           vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++
  HL.SW.v1.0.G041880.1  29 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKTYLAR 117
                           69*************************************************************************************** PP

                 NF-YB  90 yreleg 95 
                           yre ++
  HL.SW.v1.0.G041880.1 118 YREGDT 123
                           **9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5326125IPR009072Histone-fold
SuperFamilySSF471133.26E-4032161IPR009072Histone-fold
PfamPF008081.8E-283599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.9E-216381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.9E-2182100No hitNo description
PRINTSPR006153.9E-21101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
QIIMAEAPTS PAGGSPDSGG EHSPRGSGVR EQDRYLPIAN ISRIMKKALP ANGKIAKDAK  60
DTVQECVSEF ISFITSEASD KCQKEKRKTI NGDDLLWAMA TLGFEDYIEP LKTYLARYRE  120
GDTKGSGRGG DGSGKRDGLG AGPGQNPQYV HQGSLNYINS QGQHMVVPSM QGNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4828120193NF-YB
4awl_B5e-4828120294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4828120294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436199.11e-106hypothetical protein CICLE_v10032893mg
SwissprotQ8VYK41e-79NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067DSP61e-106A0A067DSP6_CITSI; Uncharacterized protein
TrEMBLV4VAZ51e-106V4VAZ5_9R
STRINGVIT_13s0019g03600.t011e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-69nuclear factor Y, subunit B8